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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10452965_10453133_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10452965 - 10453133
Intron Length:
169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTAAT
5'SS Class:
major
3'SS Sequence:
ATTTTCCTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
CTTTGCTGAGCT
Flanking Amino Acid:
DGVSCLNIVERYDPKENKWT
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
80
34.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
76.9
0.61
1
70.5
40.6
Minor 5ss
36.4
-1.5
3
51.3
45.2
Minor BPS
51.4
0.12
2.2
76.75
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008931
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009322
10448337 - 10454087
5751