Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10453268_10453848_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10453268 - 10453848

Intron Length:

581

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTATGCCTT

5'SS Class:

major

3'SS Sequence:

ACTTCCTCTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATGTCAC

U12 Branch Point Sequence:

TTGTCCAAAAAT

Flanking Amino Acid:

GSDGTSPLNTVERYNPQENR

Intron Amino Acid Position:

131

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.5

0.58

67.1

43.8

Major BPS

66.1

0.4

1.2

69.1

37.9

Major PPT

80.2

0.68

0.8

73.8

30.5

Minor 5ss

50.2

0.01

2.8

70.5

41.1

Minor BPS

53.7

0.2

2.1

78.28

43.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008931

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009322

10448337 - 10454087

5751