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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10462019_10462917_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10462019 - 10462917
Intron Length:
899

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTTAAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTCCCTTTAAAC
Flanking Amino Acid:
ASAHCDGIIKFLQSQHMIRV
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
84.7
28.3
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
72.1
0.5
0.9
69
34.8
Minor 5ss
37.2
-1.4
3.5
55
49.2
Minor BPS
67.7
0.54
1.4
72.99
37.8

Associated Gene:

Gene:
CENPL
Ensembl Gene ID:
ENSAPLG00000000945
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000924
10461947 - 10464768
2822