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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10463461_10464166_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10463461 - 10464166
Intron Length:
706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGGT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCAATCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAA
U12 Branch Point Sequence:
TTTTCCCCAATC
Flanking Amino Acid:
DQDHAAVLVQLSLKSSASQK
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.9
76.9
38.6
Major BPS
70.6
0.51
1
73.3
31.3
Major PPT
71.7
0.49
0.9
63
37.3
Minor 5ss
30.9
-2.2
3.6
46.8
48.5
Minor BPS
63.7
0.41
1.9
79.71
35.2

Associated Gene:

Gene:
CENPL
Ensembl Gene ID:
ENSAPLG00000000945
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000924
10461947 - 10464768
2822