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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10464419_10464510_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10464419 - 10464510
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGCCG
5'SS Class:
major
3'SS Sequence:
CTTTTCTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGCCAC
U12 Branch Point Sequence:
TTTTCTTTTCTT
Flanking Amino Acid:
SGRALPPGSWENADPRKTAF
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.64
1.1
57.9
46.7
Major BPS
46
-0.2
1.4
53.5
42
Major PPT
83.1
0.74
0.7
77
31.7
Minor 5ss
30.6
-2.2
3.2
31.8
42.1
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
CENPL
Ensembl Gene ID:
ENSAPLG00000000945
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000924
10461947 - 10464768
2822