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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10465020_10466019_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10465020 - 10466019
Intron Length:
1000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
TTATTTATTTGAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
RGSASAPGAADFNSFVARTN
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
65.3
0.34
1.7
78.2
39.7
Minor 5ss
27.2
-2.6
3
33.9
41.8
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
DARS2
Ensembl Gene ID:
ENSAPLG00000009344
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009746
10464914 - 10482324
17411