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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10466120_10467507_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10466120 - 10467507
Intron Length:
1388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCATGGATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATGGATC
Flanking Amino Acid:
VTLYGWIQYQRHGLFLVLRD
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
77.4
30.7
Major BPS
100
1.24
0.5
100
0
Major PPT
67.2
0.39
1.1
66.5
43.7
Minor 5ss
32.3
-2
3.2
41.6
45
Minor BPS
59.5
0.28
1.8
75.84
34.2

Associated Gene:

Gene:
DARS2
Ensembl Gene ID:
ENSAPLG00000009344
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009746
10464914 - 10482324
17411