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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10467970_10469238_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10467970 - 10469238
Intron Length:
1269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGGATG
5'SS Class:
major
3'SS Sequence:
CCTTTTGCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
AAATTTTGAATC
Flanking Amino Acid:
SSRPPGQENPKMPTGDIEVK
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
69.9
42.1
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
80.8
0.69
0.8
72.7
37.6
Minor 5ss
30.9
-2.2
3.2
40.5
45.5
Minor BPS
54.6
0.12
1.3
59.29
33.2

Associated Gene:

Gene:
DARS2
Ensembl Gene ID:
ENSAPLG00000009344
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009746
10464914 - 10482324
17411