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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10471080_10474061_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10471080 - 10474061
Intron Length:
2982

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTATGTATG
5'SS Class:
major
3'SS Sequence:
TTTCTCATGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ACTTCCTGAACC
Flanking Amino Acid:
TPTLFKRTPGGAKEFLVPSR
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
74.4
41.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
76.3
0.59
1
70.4
39.9
Minor 5ss
45
-0.5
2.5
51.3
45.4
Minor BPS
74.3
0.74
1.4
77.95
37.5

Associated Gene:

Gene:
DARS2
Ensembl Gene ID:
ENSAPLG00000009344
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009746
10464914 - 10482324
17411