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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10474169_10474976_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10474169 - 10474976
Intron Length:
808

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
AGTACTATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GGTACTTTAAAT
Flanking Amino Acid:
KQLLMVGGVDRYFQVARCYR
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
71
0.47
1
63.2
42.2
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
64.8
0.54
1.5
76
39.9

Associated Gene:

Gene:
DARS2
Ensembl Gene ID:
ENSAPLG00000009344
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009746
10464914 - 10482324
17411