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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10475047_10475608_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10475047 - 10475608
Intron Length:
562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCACC
5'SS Class:
major
3'SS Sequence:
TTTCTATTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
AATCTCTTATTT
Flanking Amino Acid:
RPDRQPEFTQIDIEMSFVDQ
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.2
69.7
41.3
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
79.2
0.66
1
83.7
30.4
Minor 5ss
46.2
-0.4
2.6
61.9
42.5
Minor BPS
58.7
0.35
1.6
72.76
38.1

Associated Gene:

Gene:
DARS2
Ensembl Gene ID:
ENSAPLG00000009344
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009746
10464914 - 10482324
17411