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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10480297_10481382_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10480297 - 10481382
Intron Length:
1086

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
CATAATTCAAGT
Flanking Amino Acid:
GAPPHGGIALGLDRLISLIV
Intron Amino Acid Position:
577

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
81.4
0.71
0.8
73.8
36.9
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
43.9
-0.3
2
59
43.9

Associated Gene:

Gene:
DARS2
Ensembl Gene ID:
ENSAPLG00000009344
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009746
10464914 - 10482324
17411