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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1050477_1050846_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1050477 - 1050846
Intron Length:
370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TAAAATCATCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
ATTAACTTAAAA
Flanking Amino Acid:
VLEALNDYKTMFMSGKEIKK
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
80.8
34.4
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
58.4
0.19
1
48.7
44.3
Minor 5ss
44.3
-0.6
2.9
62.8
41.9
Minor BPS
62.9
0.4
1.6
73.59
37.1

Associated Gene:

Gene:
MTF2
Ensembl Gene ID:
ENSAPLG00000016259
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016983
1032202 - 1056108
23907