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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10509828_10510442_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10509828 - 10510442
Intron Length:
615

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTTTC
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
TGTCTCTGAAGA
Flanking Amino Acid:
MSQSLRDHSVGED
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
78.3
32.5
Major BPS
69.8
0.49
1
61
37.5
Major PPT
77.9
0.63
0.8
69.6
36.7
Minor 5ss
37.9
-1.4
3.2
51.5
45.7
Minor BPS
53
0.09
1.8
66.34
39.7

Associated Gene:

Gene:
RGS8
Ensembl Gene ID:
ENSAPLG00000030593
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041502
10509819 - 10528499
18681