About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1051018_1051687_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1051018 - 1051687
Intron Length:
670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAATAA
5'SS Class:
strong_major
3'SS Sequence:
AATTTTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TCTTCAATAATA
Flanking Amino Acid:
RKSSKPIPDVRELSNGIERK
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.3
28.1
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
79
0.65
0.8
70.9
40
Minor 5ss
36.6
-1.5
3.1
46.9
48.4
Minor BPS
59
0.28
1.9
73.54
38.3

Associated Gene:

Gene:
MTF2
Ensembl Gene ID:
ENSAPLG00000016259
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016983
1032202 - 1056108
23907