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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10510502_10514445_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10510502 - 10514445
Intron Length:
3944

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
ATATCGACCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TCCCCCATATCG
Flanking Amino Acid:
DPRAARTGQRQNRGMRTRLG
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1
66.3
39.5
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
63.2
0.3
1
55.2
39.4
Minor 5ss
32.8
-2
2.7
42.4
38.3
Minor BPS
47.2
-0.3
2
53.59
46.9

Associated Gene:

Gene:
RGS8
Ensembl Gene ID:
ENSAPLG00000030593
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041502
10509819 - 10528499
18681