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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10514548_10515464_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10514548 - 10515464
Intron Length:
917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
TTGTCTGTAATT
Flanking Amino Acid:
ILPDKPNRALKRLSTEEASR
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.8
86
23.7
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
89.4
0.89
0.6
87.9
22.1
Minor 5ss
35.6
-1.6
2.8
42.6
38.4
Minor BPS
64
0.52
2
83.09
39.1

Associated Gene:

Gene:
RGS8
Ensembl Gene ID:
ENSAPLG00000030593
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041502
10509819 - 10528499
18681
ENSAPLT00000018656
10512496 - 10528499
16004