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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1051797_1051961_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1051797 - 1051961
Intron Length:
165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
TTGATCTGAAAT
Flanking Amino Acid:
IHKTPESSPLDNEPVPVIEN
Intron Amino Acid Position:
424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
81.3
33.2
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
85.6
0.8
0.6
85.7
21.5
Minor 5ss
42.8
-0.8
3.4
61.3
44.6
Minor BPS
57.5
0.31
1.6
74.81
41.5

Associated Gene:

Gene:
MTF2
Ensembl Gene ID:
ENSAPLG00000016259
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016983
1032202 - 1056108
23907