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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10535579_10539375_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10535579 - 10539375
Intron Length:
3797

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCCTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
ACATTCTCACCT
Flanking Amino Acid:
PGPGALLLAQRAKELKSRLG
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
90.4
20.6
Major BPS
85
0.87
0.8
85.6
23
Major PPT
71.8
0.49
0.9
65.2
36.3
Minor 5ss
33.2
-1.9
3.4
48.7
47.5
Minor BPS
49.7
0.06
1.8
66.91
43.8

Associated Gene:

Gene:
RGS16
Ensembl Gene ID:
ENSAPLG00000009623
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038684
10535099 - 10541789
6691