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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10538890_10539375_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10538890 - 10539375
Intron Length:
486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGCACAG
5'SS Class:
major
3'SS Sequence:
TCCTCCCTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
ACATTCTCACCT
Flanking Amino Acid:
MCLAPRAKELKSRLG
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.9
0.26
1.2
49.5
43.1
Major BPS
85
0.87
0.8
85.6
23
Major PPT
71.8
0.49
0.9
65.2
36.3
Minor 5ss
30
-2.3
3.3
37.9
47
Minor BPS
49.7
0.06
1.8
66.91
43.8

Associated Gene:

Gene:
RGS16
Ensembl Gene ID:
ENSAPLG00000009623
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010016
10538872 - 10541789
2918