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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10539478_10540093_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10539478 - 10540093
Intron Length:
616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
CAAGCCTGACGT
Flanking Amino Acid:
AGKLQLGSRQRDSSREVLEW
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
74.9
37
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
88
0.85
0.8
80.8
36.8
Minor 5ss
30.1
-2.3
3.2
37.9
46.9
Minor BPS
42.4
-0.5
2
54.45
46.7

Associated Gene:

Gene:
RGS16
Ensembl Gene ID:
ENSAPLG00000009623
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040388
10537642 - 10541789
4148
ENSAPLT00000038684
10535099 - 10541789
6691
ENSAPLT00000010016
10538872 - 10541789
2918