About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10541481_10541588_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10541481 - 10541588
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
GGCGAGCTAACG
Flanking Amino Acid:
EFVQSEAPREVNIDHETREI
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72.1
31.2
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
82.7
0.74
0.7
77.1
24.9
Minor 5ss
26.3
-2.7
3.1
33.4
42
Minor BPS
36.4
-1.1
2.3
38.42
43.9

Associated Gene:

Gene:
RGS16
Ensembl Gene ID:
ENSAPLG00000009623
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040388
10537642 - 10541789
4148
ENSAPLT00000038684
10535099 - 10541789
6691
ENSAPLT00000010016
10538872 - 10541789
2918