About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1054722_1055426_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
1054722 - 1055426
Intron Length:
705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
ATTCTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
CATCCCATAATT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
74
36.3
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
90.3
0.91
0.7
88.7
27.5
Minor 5ss
38.9
-1.2
2.7
53.8
42.8
Minor BPS
61.6
0.44
1.7
75.87
40.5

Associated Gene:

Gene:
MTF2
Ensembl Gene ID:
ENSAPLG00000016259
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016983
1032202 - 1056108
23907