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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10551425_10552130_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10551425 - 10552130
Intron Length:
706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGATGTT
5'SS Class:
major
3'SS Sequence:
TGTTCTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
TGTGCTCTAAAA
Flanking Amino Acid:
IRNLDEHPNERISEITGDYA
Intron Amino Acid Position:
674

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
78.6
35.9
Major BPS
73
0.57
1
73.6
28.6
Major PPT
83.3
0.75
0.9
80.8
36.8
Minor 5ss
36.6
-1.5
3.7
57.3
47.4
Minor BPS
50.6
0.01
1.9
66.08
40.1

Associated Gene:

Gene:
RNASEL
Ensembl Gene ID:
ENSAPLG00000009854
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010269
10548039 - 10552266
4228