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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10557751_10558141_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10557751 - 10558141
Intron Length:
391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCACC
5'SS Class:
major
3'SS Sequence:
CGTGCTTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAG
U12 Branch Point Sequence:
TGTCTCAGAGCA
Flanking Amino Acid:
DDLRFYLEINKFSRLADSAE
Intron Amino Acid Position:
850

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
72.6
37.3
Major BPS
53.2
0.08
1.7
65.3
43.7
Major PPT
79
0.65
0.9
72.5
37.6
Minor 5ss
42.4
-0.8
2.8
53.9
36.9
Minor BPS
44.9
-0.3
1.9
59.77
39.2

Associated Gene:

Gene:
RGSL1
Ensembl Gene ID:
ENSAPLG00000010067
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010492
10557564 - 10569585
12022