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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10559392_10559710_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
3UTR
Intron Coordinates:
10559392 - 10559710
Intron Length:
319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGACTT
5'SS Class:
major
3'SS Sequence:
TTTCTGGACGAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
GCTTTCTGGACG
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1.1
76.6
38.6
Major BPS
85
0.87
0.8
85.6
23
Major PPT
59
0.2
1.2
60.2
39.8
Minor 5ss
34.3
-1.8
3.2
48.7
46.9
Minor BPS
55.8
0.04
1.6
59.5
42.4

Associated Gene:

Gene:
RNASEL
Ensembl Gene ID:
ENSAPLG00000009854
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017179
10548039 - 10559920
11882