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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10565432_10565557_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
10565432 - 10565557
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGATG
5'SS Class:
major
3'SS Sequence:
CGCGCAAAGCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCATGAT
U12 Branch Point Sequence:
CCTTCATGATTT
Flanking Amino Acid:
SSGGVFLAAPRHAGAIGTRR
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
69.5
42.7
Major BPS
72.1
0.55
1.1
62
44.2
Major PPT
48.3
-0
1.1
36.4
38.7
Minor 5ss
29
-2.4
3.4
38.2
47
Minor BPS
47.2
-0.1
2
65.65
45.1

Associated Gene:

Gene:
RGSL1
Ensembl Gene ID:
ENSAPLG00000010067
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010492
10557564 - 10569585
12022