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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10566182_10566893_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10566182 - 10566893
Intron Length:
712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCCCGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
CTCTCCCCGACA
Flanking Amino Acid:
LLGFVRSEEAEKLLNWRSAD
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.7
83.1
30.9
Major BPS
79
0.72
1
80.3
31.7
Major PPT
69.6
0.44
0.9
64.9
30.9
Minor 5ss
30.4
-2.2
2.9
40.4
45.7
Minor BPS
49.1
-0
2
63.51
42.8

Associated Gene:

Gene:
RGSL1
Ensembl Gene ID:
ENSAPLG00000010067
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010492
10557564 - 10569585
12022