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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10567024_10567415_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10567024 - 10567415
Intron Length:
392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
GGTTGTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAT
U12 Branch Point Sequence:
CCAGCCTGATCC
Flanking Amino Acid:
DLWPELPSQLDASPPALLAW
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
0.9
74.8
29.7
Major BPS
61
0.27
1.3
53.3
44.2
Major PPT
69.8
0.45
1
61.9
44.4
Minor 5ss
27.5
-2.6
2.7
28.2
37.3
Minor BPS
46.3
-0.3
1.8
51.61
45.3

Associated Gene:

Gene:
RGSL1
Ensembl Gene ID:
ENSAPLG00000010067
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010492
10557564 - 10569585
12022