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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10567491_10567736_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10567491 - 10567736
Intron Length:
246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTCTG
5'SS Class:
major
3'SS Sequence:
CTTTTCCATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
CCACCCTGCATC
Flanking Amino Acid:
DFFNTFLNLPVFGQTPFYTS
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1.1
66
45.2
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
82.7
0.74
0.8
77.9
29.7
Minor 5ss
40.7
-1
3.1
60.3
43.9
Minor BPS
44.7
-0.4
1.9
49.2
41.2

Associated Gene:

Gene:
RGSL1
Ensembl Gene ID:
ENSAPLG00000010067
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010492
10557564 - 10569585
12022