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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1066456_1068584_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1066456 - 1068584
Intron Length:
2129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTTAGTATT
5'SS Class:
major
3'SS Sequence:
TCTTACTTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CTTTTCTTACTT
Flanking Amino Acid:
LLDMKLEDILESINSVKARL
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1.1
84.7
32.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
73.2
0.52
0.9
67.1
38.9
Minor 5ss
38.2
-1.3
2.8
50.3
39.9
Minor BPS
68.4
0.66
1.6
82.74
39.5

Associated Gene:

Gene:
TMED5
Ensembl Gene ID:
ENSAPLG00000026535
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020292
1063669 - 1071360
7692