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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10681597_10682203_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10681597 - 10682203
Intron Length:
607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
GTGTCTCCATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAA
U12 Branch Point Sequence:
TGTGTCTCCATC
Flanking Amino Acid:
ALNTVVLMMKYYSAPYTYEL
Intron Amino Acid Position:
1440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
65.8
0.39
1.4
77.7
37.1
Major PPT
69.5
0.44
1
67.6
39
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
45.7
-0.3
2
58.42
41.2

Associated Gene:

Gene:
CACNA1E
Ensembl Gene ID:
ENSAPLG00000011451
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042365
10663634 - 10729946
66313
ENSAPLT00000012181
10663634 - 10729946
66313