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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10690812_10693149_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10690812 - 10693149
Intron Length:
2338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTGAGTGAC
5'SS Class:
major
3'SS Sequence:
TTTTCCTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTGAA
U12 Branch Point Sequence:
GGGGATTGAACG
Flanking Amino Acid:
PMSAPNMPAIERDRRRRHHM
Intron Amino Acid Position:
753

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1
65.6
34.4
Major BPS
61.6
0.29
1.2
55.4
42
Major PPT
84.7
0.78
0.7
77.6
31.2
Minor 5ss
28.8
-2.4
3.1
30.9
36.7
Minor BPS
43.8
-0.6
1.7
42.67
42.2

Associated Gene:

Gene:
CACNA1E
Ensembl Gene ID:
ENSAPLG00000011451
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012181
10663634 - 10729946
66313