About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10697455_10698521_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10697455 - 10698521
Intron Length:
1067

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAAGGCT
5'SS Class:
major
3'SS Sequence:
GTGTTTTGCGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TGATGCTGAACT
Flanking Amino Acid:
NGYRAWIDKAEEVMLAEENK
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
63.8
40.7
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
68.8
0.42
1
65.4
41
Minor 5ss
30.8
-2.2
3.7
39
46.4
Minor BPS
60.7
0.41
1.9
78.99
42.5

Associated Gene:

Gene:
CACNA1E
Ensembl Gene ID:
ENSAPLG00000011451
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042365
10663634 - 10729946
66313
ENSAPLT00000012181
10663634 - 10729946
66313