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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10723925_10724342_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10723925 - 10724342
Intron Length:
418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTCAGTGCC
5'SS Class:
major
3'SS Sequence:
TCCCCTCCGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCACCAT
U12 Branch Point Sequence:
TACCCCTCACCA
Flanking Amino Acid:
DDKTPMSRRLEKTEPYFIGI
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.3
69
37
Major BPS
53
0.08
1.4
63
42.7
Major PPT
68.9
0.43
0.9
65
30.6
Minor 5ss
29.5
-2.3
3
33.8
35.1
Minor BPS
49.8
-0
1.9
62.47
43.3

Associated Gene:

Gene:
CACNA1E
Ensembl Gene ID:
ENSAPLG00000011451
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042365
10663634 - 10729946
66313
ENSAPLT00000012181
10663634 - 10729946
66313