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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1072971_1074008_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1072971 - 1074008
Intron Length:
1038

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTATC
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
GAAGCCTTAAAT
Flanking Amino Acid:
NLELMQLKTKISYLESTLGT
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
0.9
80.7
31.7
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
81.5
0.71
0.9
78.1
40.1
Minor 5ss
48.1
-0.2
2.4
63.2
35.1
Minor BPS
63.2
0.49
1.6
72.67
43.2

Associated Gene:

Gene:
CCDC18
Ensembl Gene ID:
ENSAPLG00000002499
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002546
1072097 - 1096152
24056