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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1074119_1075022_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1074119 - 1075022
Intron Length:
904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGTAC
5'SS Class:
major
3'SS Sequence:
GTTTATTTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTGTTTTTAAAT
Flanking Amino Acid:
AEISAQDKILRDTEDKLEQS
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.2
70
37.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
75.8
0.58
1.1
69.4
45.7
Minor 5ss
42.6
-0.8
3.2
58.3
46.6
Minor BPS
65.8
0.57
1.4
76.07
41.1

Associated Gene:

Gene:
CCDC18
Ensembl Gene ID:
ENSAPLG00000002499
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002546
1072097 - 1096152
24056