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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10754331_10755829_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10754331 - 10755829
Intron Length:
1499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAGGTCCT
5'SS Class:
major
3'SS Sequence:
CTTTTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAC
U12 Branch Point Sequence:
GGGGACTGACTC
Flanking Amino Acid:
KLAKVSHMTSDRRQWCAIIV
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
66.6
44.7
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
91.8
0.94
0.6
84.6
30.3
Minor 5ss
35.9
-1.6
3.3
51.6
44.8
Minor BPS
39.7
-0.8
1.8
41.54
38.7

Associated Gene:

Gene:
STX6
Ensembl Gene ID:
ENSAPLG00000020816
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020894
10745399 - 10757951
12553