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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10761660_10762677_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10761660 - 10762677
Intron Length:
1018

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCGG
5'SS Class:
major
3'SS Sequence:
CCCCGCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAC
U12 Branch Point Sequence:
CCCCTCCCACCC
Flanking Amino Acid:
GVSLQDAEGCRAFVPGQELE
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
59.7
46.7
Major BPS
50
0
1.2
61.8
35.9
Major PPT
64.6
0.33
0.8
57
27.2
Minor 5ss
26.8
-2.7
2.9
31.8
42.6
Minor BPS
37.4
-0.9
1.9
39.62
39.8

Associated Gene:

Gene:
KIAA1614
Ensembl Gene ID:
ENSAPLG00000026247
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040811
10758393 - 10763992
5600