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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10762742_10763034_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10762742 - 10763034
Intron Length:
293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGCGTGCC
5'SS Class:
major
3'SS Sequence:
CCTCCCAACCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CTCCTCCCAACC
Flanking Amino Acid:
LGLAAAGSAQEVLASDGDWD
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1.1
60.9
39.4
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
63.8
0.31
0.9
54.7
34
Minor 5ss
27
-2.6
3.1
26.9
36.6
Minor BPS
46.1
-0.3
1.9
56.28
42.1

Associated Gene:

Gene:
KIAA1614
Ensembl Gene ID:
ENSAPLG00000026247
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040811
10758393 - 10763992
5600