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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1076328_1077119_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1076328 - 1077119
Intron Length:
792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGGGTTTA
5'SS Class:
major
3'SS Sequence:
CTTACTTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
TATTGCTACACA
Flanking Amino Acid:
NEKIIEKLEKVQAEKEALEK
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
73.9
33
Major BPS
67.7
0.44
1
58
38.9
Major PPT
75.1
0.56
1
78.9
33.2
Minor 5ss
38.6
-1.3
3.2
48.3
42.4
Minor BPS
47.6
-0.1
2.4
68.06
44.4

Associated Gene:

Gene:
CCDC18
Ensembl Gene ID:
ENSAPLG00000002499
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002546
1072097 - 1096152
24056