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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10767616_10768482_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10767616 - 10768482
Intron Length:
867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGATA
5'SS Class:
major
3'SS Sequence:
TTCTGACTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTAAGC
Flanking Amino Acid:
ASQSKASDIKLLLLLLGTSL
Intron Amino Acid Position:
654

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
73.3
37.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.1
0.61
0.8
74.3
35.5
Minor 5ss
42
-0.9
3.1
57.3
47
Minor BPS
63.7
0.41
1.6
74.14
36.9

Associated Gene:

Gene:
XPR1
Ensembl Gene ID:
ENSAPLG00000015869
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016581
10767357 - 10891942
124586