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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1079125_1080475_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1079125 - 1080475
Intron Length:
1351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGTAA
5'SS Class:
major
3'SS Sequence:
CTTTTACTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
TTTCCTTTTACT
Flanking Amino Acid:
SQLSLSISEEFKWHHLKHQV
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.4
36.8
Major BPS
76.2
0.65
1
67
39.8
Major PPT
83.8
0.76
0.7
82.1
28.6
Minor 5ss
34.3
-1.8
3.5
46.3
49
Minor BPS
72.7
0.8
1.6
89.79
34

Associated Gene:

Gene:
CCDC18
Ensembl Gene ID:
ENSAPLG00000002499
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002546
1072097 - 1096152
24056