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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1080577_1080682_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1080577 - 1080682
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAACTT
5'SS Class:
major
3'SS Sequence:
TTCTTTCGAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TATTAAATAATT
Flanking Amino Acid:
ELRKPLVADLSIELAMKEAE
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
70.5
39.5
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
71.7
0.49
0.9
69.9
35.4
Minor 5ss
43.3
-0.7
3.3
65.1
46.1
Minor BPS
50.9
0.11
2
76.97
38.8

Associated Gene:

Gene:
CCDC18
Ensembl Gene ID:
ENSAPLG00000002499
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002546
1072097 - 1096152
24056