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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1081723_1082507_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1081723 - 1082507
Intron Length:
785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TATTTAATTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ACATATTTAATT
Flanking Amino Acid:
ASKTNSLEQEIVKKSSQLSA
Intron Amino Acid Position:
521

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
33.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
80.5
0.69
0.9
71.5
42.8
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
62.2
0.46
1.5
71.92
39.3

Associated Gene:

Gene:
CCDC18
Ensembl Gene ID:
ENSAPLG00000002499
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002546
1072097 - 1096152
24056