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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1082619_1083490_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1082619 - 1083490
Intron Length:
872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGATGT
5'SS Class:
strong_major
3'SS Sequence:
TGCCATTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTATTTTTAAGT
Flanking Amino Acid:
RNAELEQELMGKNSRIRELE
Intron Amino Acid Position:
558

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
74.2
37
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
77.8
0.63
0.9
68.7
41.7
Minor 5ss
39.8
-1.1
3.1
53.4
45.6
Minor BPS
62.8
0.48
1.6
75.56
41.8

Associated Gene:

Gene:
CCDC18
Ensembl Gene ID:
ENSAPLG00000002499
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002546
1072097 - 1096152
24056