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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1086743_1087198_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1086743 - 1087198
Intron Length:
456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAATAC
5'SS Class:
major
3'SS Sequence:
CACTTTTAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ACATATTTAAAT
Flanking Amino Acid:
EDNQIKLEKQVSTLEQELQK
Intron Amino Acid Position:
768

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
65.6
35
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
65.2
0.34
1
62.3
37.4
Minor 5ss
36.5
-1.5
3.3
50
46.5
Minor BPS
56.8
0.29
1.6
69.57
40.9

Associated Gene:

Gene:
CCDC18
Ensembl Gene ID:
ENSAPLG00000002499
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002546
1072097 - 1096152
24056