About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1089776_1090868_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1089776 - 1090868
Intron Length:
1093

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGATTG
5'SS Class:
major
3'SS Sequence:
GTTTTATATCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TGTTTTATATCT
Flanking Amino Acid:
NWELKQRAAQITQLDMMVRE
Intron Amino Acid Position:
970

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.3
72.5
39.9
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
74.8
0.56
0.9
67.5
43
Minor 5ss
37
-1.5
3.1
47.6
47.9
Minor BPS
53.9
0.2
1.9
77.05
39.5

Associated Gene:

Gene:
CCDC18
Ensembl Gene ID:
ENSAPLG00000002499
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002546
1072097 - 1096152
24056