About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10907547_10912460_F


Intron Information:

Intron Rank:
1

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
10907547 - 10912460

Intron Length:
4914

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTGAGGCCC

5'SS Class:
strong_major

3'SS Sequence:
TTCTTTTCTTTAG|G

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TTCTAAC

U12 Branch Point Sequence:
TTTGTTCTAACA

Flanking Amino Acid:
LLYLYARYKQVKFGPCNTPK

Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
83.3
0.78
0.9
66.5
39.1

Major BPS
84.6
0.86
0.8
83.9
22.3

Major PPT
88.7
0.87
0.6
88.9
20.4

Minor 5ss
26.6
-2.7
3.1
33.5
41.9

Minor BPS
60.1
0.31
1.7
75.11
36.7

Associated Gene:

Gene:
ACBD6

Ensembl Gene ID:

Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

10906784 - 10956454
49671

10906784 - 10949767
42984