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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_10955733_10956224_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10955733 - 10956224
Intron Length:
492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTAACTTCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTCTTTTTAACT
Flanking Amino Acid:
HSMYASQPAPVLITVTPCK*
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
73
38.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
72.2
0.5
1.1
69.3
40.8
Minor 5ss
25.5
-2.8
3.5
37.8
47.1
Minor BPS
82
1.08
1
90.89
33.1

Associated Gene:

Gene:
ACBD6
Ensembl Gene ID:
ENSAPLG00000005593
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042093
10906784 - 10956454
49671